/**
 * General configuration
 */
YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Homo_sapiens.GRCh37.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Rattus_norvegicus.RGSC3.4.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Canis_familiaris.BROADD2.reference";
YAHOO.dasBrowser.genome.karyotypeStructure.karyotype.zoomConf.defaultValues = [1,153264619,154085448];
YAHOO.dasBrowser.genome.karyotypeStructure.entryPoints.userEntryPoints = [1,5,6];
//YAHOO.dasBrowser.genome.panel.userContainers = ['sequenceView', 'zoomView', 'chromosomeView', 'karyotypeView']; //Possible containers ... ['annotationListView', 'sequenceView', 'zoomView', 'bandView', 'chromosomeView', 'karyotypeView', 'copyNumberView', 'test']

/**
 * Sources
 */
//panel options: karyotype, chromosome, band, zoom. Karyotype includes, chromosome, band and zoom. Chromosome includes band and zoom.
//representation options: mark, line, chart, track

var source062 = new Object();
source062.id = 'local02';
source062.url ='http://www.ensembl.org/das/Homo_sapiens.NCBI36.translation/features';
source062.name ='Exon';
source062.label =['ENSEMBL'];
source062.description ='translation';
source062.representation ='mark';
source062.panel ='zoom';
source062.ntLimit =200000;
source062.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source062);

var source02 = new Object();
source02.id = 'DS_717';
source02.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/cytochip3_36/features';
source02.name ='cytochip3_36';
source02.label =['EBI'];
source02.description ='cytochip3_36';
source02.representation ='mark';
source02.panel ='chromosome';
source02.ntLimit =null;
source02.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source02);


var source044 = new Object();
source044.id = 'local44';
source044.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/cnv_test4/features';
source044.name ='cnv';
source044.label =['ENSEMBL'];
source044.description ='cnv';
source044.representation ='line';
source044.panel ='karyotype';
source044.ntLimit =null;
source044.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source044);


var source029 = new Object();
source029.id = 'DS_717';
source029.url ='http://www.ensembl.org/das/Homo_sapiens.NCBI36.karyotype/features';
source029.name ='citobands';
source029.label =['EBI'];
source029.description ='citobans';
source029.representation ='track';
source029.panel ='karyotype';
source029.ntLimit =null;
source029.types = ['band:gpos100','band:gneg'];
YAHOO.dasBrowser.genome.annotations.sources.push(source029);



var source060 = new Object();
source060.id = 'local60';
source060.url ='http://das.sanger.ac.uk/das/hgnc36/features';
source060.name ='genes';
source060.label =['ENSEMBL'];
source060.description ='hgnc36';
source060.representation ='mark';
//source060.representation ='track';
source060.panel ='zoom';
source060.ntLimit =17000000;
source060.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source060);


var source01 = new Object();
source01.id = 'DS_224';
source01.url ='http://das.ensembl.org/das/toronto_poly/features';
source01.name ='toronto poly';
source01.label =['ENSEMBL'];
source01.description ='toronto poly ids, copy number variations, group ids and notes';
source01.representation ='track';
source01.panel ='karyotype';
source01.ntLimit =null;
source01.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source01);
/*
//OLD, no mapmaster
var source061 = new Object();
source061.id = 'local61';
source061.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/miRNA2/features';
source061.name ='miRNA2';
source061.label =['ENSEMBL'];
source061.description ='miRNA2';
source061.representation ='chart';
source061.panel ='karyotype';
source061.ntLimit =null;
source061.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source061);


var source061 = new Object();
source061.id = 'local01';
source061.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/miRNA2/features';
source061.name ='miRNA2';
source061.label =['ENSEMBL'];
source061.description ='miRNA2';
source061.representation ='chart';
source061.panel ='karyotype';
YAHOO.dasBrowser.genome.annotations.sources.push(source061);

var source01 = new Object();
source01.id = 'DS_224';
source01.url ='http://das.ensembl.org/das/toronto_poly/features';
source01.name ='toronto poly';
source01.label =['ENSEMBL'];
source01.description ='toronto poly ids, copy number variations, group ids and notes';
source01.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source01);


var source04 = new Object();
source04.id = 'DS_224';
source04.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-0.0.1/dasserver?id=karyoviewfile_mir_txt%26cmd=features';
source04.name ='condor_human';
source04.label =['ENSEMBL'];
source04.description ='CONDOR CNE coordinates for the human genome';
source04.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source04);	


var source07 = new Object();
source07.id = 'DS_493';
source07.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/eqtl_rat_cis_fat/features';
source07.name ='eQTL cis RI fat';
source07.label =['ENSEMBL'];
source07.description ='Expression Quantitative Trait Loci (cis) for Rattus norvegicus.';
source07.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source07);

var source01 = new Object();
source01.id = 'DS_224';
source01.url ='http://das.ensembl.org/das/toronto_poly/features';
source01.name ='toronto poly';
source01.label =['ENSEMBL', 'copynumber'];
source01.description ='toronto poly ids, copy number variations, group ids and notes';
source01.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source01);


var source01 = new Object();
source01.id = 'DS_224';
//source01.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-0.0.1/das/454data/features';
source01.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-0.0.1/das/Eva/features';
source01.name ='toronto poly';
source01.label =['ENSEMBL', 'copynumber'];
source01.description ='toronto poly ids, copy number variations, group ids and notes';
source01.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source01);


var source01 = new Object();
source01.id = 'DS_224';
source01.url ='http://das.ensembl.org/das/toronto_poly/features';
source01.name ='toronto poly';
source01.label =['ENSEMBL', 'copynumber'];
source01.description ='toronto poly ids, copy number variations, group ids and notes';
source01.representation ='mark';
YAHOO.dasBrowser.genome.annotations.sources.push(source01);

var source02 = new Object();
source02.id = 'DS_585';
source02.url ='http://das.sanger.ac.uk/das/hsaprimiRNA/features';
source02.name ='hsaprimiRNA';
source02.label =['EBI'];
source02.description ='Expression Quantitative Trait Loci from the Sanger Institute';
source02.representation ='mark';
YAHOO.dasBrowser.genome.annotations.sources.push(source02);

var source04 = new Object();
source04.id = 'DS_579';
source04.url ='http://tables.gersteinlab.org:9000/das/consensus_pgenes/features';
source04.name ='Consensus Pseudogenes';
source04.label =['EBI'];
source04.description ='	Pseudogenes where both Yales PseudoPipe and UCSCs RetroFinder algorithms agree.';
source04.representation ='mark';
YAHOO.dasBrowser.genome.annotations.sources.push(source04);


var source03 = new Object();
source03.id = 'local03';
source03.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-0.0.1/das/454/features';
source03.name ='sequencing';
source03.label =['CIPF'];
source03.description ='Sequencing data';
source03.representation ='chart';
YAHOO.dasBrowser.genome.annotations.sources.push(source03);

var source044 = new Object();
source044.id = 'local01';
source044.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/cnv_test4/features';
source044.name ='cnv';
source044.label =['ENSEMBL'];
source044.description ='cnv';
source044.representation ='line';
YAHOO.dasBrowser.genome.annotations.sources.push(source044);

var source045 = new Object();
source045.id = 'local01';
source045.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/cgh_test/features';
source045.name ='CGH';
source045.label =['ENSEMBL'];
source045.description ='CGH';
source045.representation ='line';
YAHOO.dasBrowser.genome.annotations.sources.push(source045);

*/